The Resource Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer, by Hongxin Zhang

Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer, by Hongxin Zhang

Label
Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer
Title
Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer
Statement of responsibility
by Hongxin Zhang
Title variation
Development of tools for Soybean Knowledge Base
Creator
Contributor
Author
Thesis advisor
Subject
Genre
Language
eng
Summary
Soybean Knowledge Base (SoyKB) is a comprehensive website, which contains lots of web sources for soybean. By integrating multi omics data and solving data storage problem, SoyKB is able to build connection between multiple datasets. Lots of hands--on tools has been designed and developed into SoyKB. And three of them, SNPViz, Differential Expression and Protein BioViewer, will be introduced in detailed methodology and function demonstration. SNPViz is a simple--to--use SNP haplotype viewer. Its variety of options to view haplotypes from designated gene areas to larger chromosomal areas makes users able to scrutinize on different levels with ease. Its dataset selection function increases its convenience to use as it allows users to put in SNP--array files along with annotation files. SNPViz collects all the samples and composes a phylogeny tree according to the identity of haplotypes. Differential Expression is for visualizing all kinds of data including Transcriptomics RNA--Seq, Microarray, Metabolites and Proteomics data, which all come from public sources and collaborators. It features six functions: Gene Lists, Venn Diagram, Volcano Plot, Function Information, Path Information and Enrichment Analysis. They will be used based on thresholds settings (p--value/q--value, fold change) by users' input. Protein BioViewer is designed to show the primary protein sequence, predicted secondary structures, phosphorylation positions, amino acid characteristics, functional domain positions and transmembrane helix positions
Cataloging source
MUU
http://library.link/vocab/creatorName
Zhang, Hongxin
Degree
M.S.
Dissertation note
Thesis
Dissertation year
2014.
Government publication
government publication of a state province territory dependency etc
Granting institution
University of Missouri--Columbia
Illustrations
illustrations
Index
no index present
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
  • theses
http://library.link/vocab/relatedWorkOrContributorDate
1965-
http://library.link/vocab/relatedWorkOrContributorName
Xu, Dong
http://library.link/vocab/subjectName
  • Soybean
  • Big data
Label
Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer, by Hongxin Zhang
Instantiates
Publication
Note
  • "July 2014."
  • "A Thesis Presented to The Faculty of the Graduate School at the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Master of Science."
  • Advisor: Dr. Dong Xu
Accompanying material
2 supplementary files.
Bibliography note
Includes bibliographical references (pages 60-63)
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier.
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent.
Control code
917722911
Extent
1 online resource (ix, 63 pages)
Form of item
online
Media category
computer
Media MARC source
rdamedia.
Media type code
  • c
Other physical details
illustrations (chiefly color) +
Specific material designation
remote
System control number
(OCoLC)917722911
Label
Development of tools for SoyKB: SNPViz, differential expression and protein bioviewer, by Hongxin Zhang
Publication
Note
  • "July 2014."
  • "A Thesis Presented to The Faculty of the Graduate School at the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Master of Science."
  • Advisor: Dr. Dong Xu
Accompanying material
2 supplementary files.
Bibliography note
Includes bibliographical references (pages 60-63)
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier.
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent.
Control code
917722911
Extent
1 online resource (ix, 63 pages)
Form of item
online
Media category
computer
Media MARC source
rdamedia.
Media type code
  • c
Other physical details
illustrations (chiefly color) +
Specific material designation
remote
System control number
(OCoLC)917722911

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